Difference between revisions of "PracticalInferenceSchedule"

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{{DISPLAYTITLE:Schedule}}
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__NOTITLE__
[this is work in progress]
 
<pre>
 
Programs:
 
1genepop
 
10beast phylogeny (snapp)
 
9beast skyline
 
8migrate divergence/migration
 
4dadi
 
2structure
 
13fastsimcoal2
 
15angsd
 
5treemix
 
? plink
 
11refbayes
 
6tess
 
12IMa
 
7Eigensoft
 
  
 +
* Week 1
 +
**  8/24  Intro and organisation
 +
**  8/26  Genepop/Isolation by distance/FST, short introduction about the methods and tutorial
 +
   
 +
* Week 2   
 +
** 8/31  Structure  Scribe
 +
** [out of town] Read up about the method, and
 +
 +
* Week 3   
 +
** 9/7 Labor day no class
 +
** 9/9 Tutorial of Structure   
  
week dates
 
1   
 
    8/24  Intro and organisation
 
    8/26  Genepop/Isolation by distance/FST Scribe
 
    8/28  Tutorial   
 
2   
 
    8/31  Structure  Scribe
 
    --
 
    --
 
3   
 
    Labor day no class
 
    9/9  Tutorial 
 
    9/11  Tutorial  Report1
 
 
4     
 
4     
 
     9/14  dadi Scribe  
 
     9/14  dadi Scribe  

Revision as of 05:16, 25 August 2015

__NOTITLE__

  • Week 1
    • 8/24 Intro and organisation
    • 8/26 Genepop/Isolation by distance/FST, short introduction about the methods and tutorial
  • Week 2
    • 8/31 Structure Scribe
    • [out of town] Read up about the method, and
  • Week 3
    • 9/7 Labor day no class
    • 9/9 Tutorial of Structure

4

    9/14  dadi Scribe 
    9/16  Tutorial   
    9/18  Tutorial   Report2 Review1  

5

    9/21  treemix  Scribe
    9/23  Tutorial
    9/25  Tutorial Report3 Review2

6

    9/28  tess  Scribe
    9/30  Tutorial 
    10/2  Tutorial  Report4 Review3

7

    10/5  Eigensoft Scribe
    10/7  Tutorial 
    10/9  Tutorial  Report5 Review4

8

    10/12 Migrate   Scribe  Review5
    --    Self-tutorial
    --    Self-tutorial All write a short report

9

    --    Finish writing report
    10/21 Migrate recap: Discussion about how to write a self-guided tutorial
    10/23 Beast skyline  Scribe

10

    10/26 Tutorial
    10/28 Beast SNAPP  Scribe
    10/30 Tutorial  Report6 

11

    11/2  refbayes  Scribe
    11/4  Tutorial
    11/6  Tutorial  Report7 Review6

12

    11/9  IMa    Scribe
    --    Self-tutorial 
    --    Compare to migrate using a simulated dataset

13

    --    ALL: write a short report abot the migrate-ima comparison
    11/18 fastsimcoal2  Scribe
    11/20 Tutorial  

14

    11/23 Tutorial   Report8 Review7 
    Thanksgiving
    Thanksgiving

15

    11/30 angsd     Scribe Review8	
    12/2  Tutorial
    12/4  Tutorial  

finals week