Difference between revisions of "ISC-5935PPG"
(Created page with "= ISC-5935PPG Practical Population genetic and Phylogenetic inference = This course is a tour de force discussing the theory behind 12 program packages and executions of tutor...") |
|||
| Line 1: | Line 1: | ||
= ISC-5935PPG Practical Population genetic and Phylogenetic inference = | = ISC-5935PPG Practical Population genetic and Phylogenetic inference = | ||
This course is a tour de force discussing the theory behind 12 program packages and executions of tutorials. | This course is a tour de force discussing the theory behind 12 program packages and executions of tutorials. | ||
| − | + | [[File:studentswithcomputers.jpg]] | |
== Goal == | == Goal == | ||
We learn about the details and pitfalls of inference software. The students will need to write short reports about data analyses using the discussed software, write short reviews of the reports, and also act as the scribe for the lectures. | We learn about the details and pitfalls of inference software. The students will need to write short reports about data analyses using the discussed software, write short reviews of the reports, and also act as the scribe for the lectures. | ||
Revision as of 11:08, 17 August 2015
ISC-5935PPG Practical Population genetic and Phylogenetic inference
This course is a tour de force discussing the theory behind 12 program packages and executions of tutorials.
Goal
We learn about the details and pitfalls of inference software. The students will need to write short reports about data analyses using the discussed software, write short reviews of the reports, and also act as the scribe for the lectures.
Current Schedule
[this is work in progress]
Programs:
1genepop
10beast phylogeny (snapp)
9beast skyline
8migrate divergence/migration
4dadi
2structure
13fastsimcoal2
15angsd
5treemix
? plink
11refbayes
6tess
12IMa
7Eigensoft
week dates
1
8/24 Intro and organisation
8/26 Genepop/Isolation by distance/FST Scribe
8/28 Tutorial
2
8/31 Structure Scribe
--
--
3
Labor day no class
9/9 Tutorial
9/11 Tutorial Report1
4
9/14 dadi Scribe
9/16 Tutorial
9/18 Tutorial Report2 Review1
5
9/21 treemix Scribe
9/23 Tutorial
9/25 Tutorial Report3 Review2
6
9/28 tess Scribe
9/30 Tutorial
10/2 Tutorial Report4 Review3
7
10/5 Eigensoft Scribe
10/7 Tutorial
10/9 Tutorial Report5 Review4
8
10/12 Migrate Scribe Review5
-- Self-tutorial
-- Self-tutorial All write a short report
9
-- Finish writing report
10/21 Migrate recap: Discussion about how to write a self-guided tutorial
10/23 Beast skyline Scribe
10
10/26 Tutorial
10/28 Beast SNAPP Scribe
10/30 Tutorial Report6
11
11/2 refbayes Scribe
11/4 Tutorial
11/6 Tutorial Report7 Review6
12
11/9 IMa Scribe
-- Self-tutorial
-- Compare to migrate using a simulated dataset
13
-- ALL: write a short report abot the migrate-ima comparison
11/18 fastsimcoal2 Scribe
11/20 Tutorial
14
11/23 Tutorial Report8 Review7
Thanksgiving
Thanksgiving
15
11/30 angsd Scribe Review8
12/2 Tutorial
12/4 Tutorial
finals week
