Job lonely-ring-ccfc
This output file was generated at:
2015-Sep-09 07:20:39 PDT
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Single file archive including this page, all images, all clumpp files: download. [.tar.gz]
L(K)
Clumpp files
K = 1 Clumpp indfile K = 1 Clumpp popfile
K = 2 Clumpp indfile K = 2 Clumpp popfile
K = 3 Clumpp indfile K = 3 Clumpp popfile
K = 4 Clumpp indfile K = 4 Clumpp popfile
Evanno method
*Evanno et al., 2005. Molecular Ecology 14, 2611 - 2620. How are we calculating this? Look at the FAQ.
The Evanno table output is also available as a tab-delimited text file (for use with Excel) here.
| K | Reps | Mean LnP(K) | Stdev LnP(K) | Ln'(K) | |Ln''(K)| | Delta K |
|---|---|---|---|---|---|---|
| 1 | 5 | -2152.480000 | 0.216795 | — | — | — |
| 2 | 5 | -1888.840000 | 1.250200 | 263.640000 | 109.920000 | 87.921934 |
| 3 | 5 | -1735.120000 | 6.223102 | 153.720000 | 142.060000 | 22.827843 |
| 4 | 5 | -1723.460000 | 95.639756 | 11.660000 | 99.960000 | 1.045172 |
| 5 | 5 | -1611.840000 | 4.943481 | 111.620000 | 215.380000 | 43.568493 |
| 6 | 5 | -1715.600000 | 132.033310 | -103.760000 | — | — |
Raw STRUCTURE output
The raw STRUCTURE output is also available as a tab-delimited text file (for use with Excel) here.
| File name | Run # | K | Est. Ln prob. of data | Mean value of Ln likelihood | Variance of Ln likelihood |
|---|---|---|---|---|---|
| Resultsbasic_qhat_run_3_f | 3 | 1 | -2152.2 | -2140.5 | 23.4 |
| Resultsbasic_qhat_run_5_f | 5 | 1 | -2152.7 | -2140.4 | 24.6 |
| Resultsbasic_qhat_run_2_f | 2 | 1 | -2152.6 | -2140.6 | 24.2 |
| Resultsbasic_qhat_run_4_f | 4 | 1 | -2152.3 | -2140.4 | 23.8 |
| Resultsbasic_qhat_run_1_f | 1 | 1 | -2152.6 | -2140.6 | 24.1 |
| Resultsbasic_qhat_run_6_f | 6 | 2 | -1890.0 | -1862.5 | 55.1 |
| Resultsbasic_qhat_run_9_f | 9 | 2 | -1887.3 | -1862.1 | 50.3 |
| Resultsbasic_qhat_run_7_f | 7 | 2 | -1889.8 | -1862.7 | 54.2 |
| Resultsbasic_qhat_run_10_f | 10 | 2 | -1889.4 | -1862.3 | 54.2 |
| Resultsbasic_qhat_run_8_f | 8 | 2 | -1887.7 | -1862.1 | 51.2 |
| Resultsbasic_qhat_run_15_f | 15 | 3 | -1739.7 | -1680.6 | 118.3 |
| Resultsbasic_qhat_run_12_f | 12 | 3 | -1734.9 | -1680.1 | 109.6 |
| Resultsbasic_qhat_run_11_f | 11 | 3 | -1730.2 | -1679.2 | 102.1 |
| Resultsbasic_qhat_run_13_f | 13 | 3 | -1728.0 | -1678.9 | 98.3 |
| Resultsbasic_qhat_run_14_f | 14 | 3 | -1742.8 | -1681.3 | 123.0 |
| Resultsbasic_qhat_run_17_f | 17 | 4 | -1674.1 | -1575.6 | 196.9 |
| Resultsbasic_qhat_run_19_f | 19 | 4 | -1665.2 | -1577.6 | 175.2 |
| Resultsbasic_qhat_run_20_f | 20 | 4 | -1891.1 | -1602.0 | 578.2 |
| Resultsbasic_qhat_run_18_f | 18 | 4 | -1714.1 | -1579.5 | 269.3 |
| Resultsbasic_qhat_run_16_f | 16 | 4 | -1672.8 | -1576.2 | 193.2 |
| Resultsbasic_qhat_run_21_f | 21 | 5 | -1613.7 | -1522.3 | 182.8 |
| Resultsbasic_qhat_run_25_f | 25 | 5 | -1609.9 | -1521.9 | 176.0 |
| Resultsbasic_qhat_run_22_f | 22 | 5 | -1604.1 | -1521.6 | 164.9 |
| Resultsbasic_qhat_run_24_f | 24 | 5 | -1615.6 | -1521.7 | 187.8 |
| Resultsbasic_qhat_run_23_f | 23 | 5 | -1615.9 | -1522.6 | 186.6 |
| Resultsbasic_qhat_run_26_f | 26 | 6 | -1797.0 | -1475.7 | 642.5 |
| Resultsbasic_qhat_run_30_f | 30 | 6 | -1582.3 | -1459.8 | 245.0 |
| Resultsbasic_qhat_run_28_f | 28 | 6 | -1902.3 | -1467.1 | 870.5 |
| Resultsbasic_qhat_run_27_f | 27 | 6 | -1674.6 | -1470.1 | 408.9 |
| Resultsbasic_qhat_run_29_f | 29 | 6 | -1621.8 | -1525.5 | 192.7 |
CITATION
Earl, Dent A. and vonHoldt, Bridgett M. (2012) STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conservation Genetics Resources vol. 4 (2) pp. 359-361 doi: 10.1007/s12686-011-9548-7 Core version: vA.2 July 2014 Plot version: vA.1 November 2012 Web version: v0.6.94 July 2014